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miraoh

mira oh



2008-04-07


Association


  • Association to Gene Expression Phenotype
    • Quantitative Trait Loci (QTL) - R package http://www.rqtl.org/
      • general SNP data analysis
      • not execute gene expression data




2008-04-08

  • gene expression°ú cnv window sizeº°·Î ÀÚ·á ±¸ºÐ
    • °°Àº window sizeÀÇ ÀڷḦ Æò±Õ·Î ±¸ÇÔ.


2008-04-10

  • °¢ chromosome¿¡¼­ °øÅëµÈ window sizeÀÇ ÀڷḦ °¡Áö°í R^2¸¦ ±¸ÇÑ°á°ú °¡Àå Å« °ªÀº 0.4866312
    • cnvÀÚ·áÀÇ °ªÀÌ 0ÀÎ °æ¿ì´Â simple linear regression ±¸ÇÒ ¼ö ¾øÀ½


2008-04-11

  • cnv ÀÚ·á¿¡¼­ ¸ðµç Ç¥º»ÀÌ '0'ÀÎ °æ¿ì »èÁ¦, gene expression ÀÚ·á´Â À½¼öÀÎ °æ¿ì '0'À¸·Î ´ëüÇؼ­ window sizeÀÇ ¹Ýº¹½ÇÇàÇÑ °á°ú max(R^2)=0.6195708
    • µÎ ÀÚ·áÀÇ window sizeº°·Î ¹Ýº¹ ½ÇÇàµÇ¹Ç·Î 39ºÐ ¼Ò¿äµÊ.


2008-04-14

  • °¢ geneÀ» Ç¥º»¿¡ ´ëÇؼ­ permuationÇÏ¿© p°ª ±¸Çϱâ ...
    • univariate t-testÀÇ p°ª ...
    • corrected p-value ?


2008-04-15

  • gene expression ÀڷḦ permutationÇÑ R^2°¡ ¿ø·¡ÀÇ R^2°ªº¸´Ù Å« ºóµµ¼ö ±¸Çϱâ ...
    • ¿ø·¡ÀÇ R^2 > 0.1 º¸´Ù Å« ÀڷḦ °¡Áö°í permutation...


2008-04-16

  • ¿ø·¡ÀÇ R^2 > 0.1 º¸´Ù Å« ÀڷḦ °¡Áö°í permutationÇÏ¸é ½Ã°£ÀÌ ¿À·¡°É¸²
    • R^2 > 0.3 °ú R^2 > 0.2 ÀÎ °æ¿ì ½ÇÇà
    • R^2 > 0.1Àº ÁÖ¸»¿¡ ½ÇÇà ¿¹Á¤


2008-04-17

  • GBM_SNPÀÇ Top50ÀÎ °á°ú, CBS °á°ú¿Í CNV+Gene °á°ú ºñ±³


2008-04-18

  • GBM_SNPÀÇ Top50ÀÎ °á°ú, CBS °á°ú¿Í CNV+Gene °á°ú ºñ±³
    • °øÅëÀûÀÎ chromosomeÀÇ position ã±â




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